Allikka Parambil, S., Li, D., Zelko, M., Poulet, A., van Wolfswinkel, J.C. (2023) piRNA generation is associated with the pioneer round of translation in stem cells. Nucleic Acids Research, gkad1212, 1-17

van Wolfswinkel, J.C. (2023) Insights in piRNA targeting rules. WIREs RNA, e1811, 1-21

Poulet, A. *, Kratkiewicz, A.J. *, Li, D., van Wolfswinkel, J.C. (2023) Chromatin analysis of adult pluripotent stem cells reveals a unique stemness maintenance strategy. Science Advances 9, eadh4887, 1-17


Dubos, T.*, Poulet, A.*, Thomson, G., Péry, E., Chausse F., Tatout C., Desset S.*, van Wolfswinkel, J.C.*, Jacob Y.* (2022) NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects. BMC Bioinformatics 23, 216, 1-11


Li D., Taylor D.H, van Wolfswinkel J.C. (2021) PIWI-mediated control of tissue-specific transposons is essential for somatic cell differentiation. Cell Reports 37, 109776, 1-18


Carmell M.A., Dokshin G.A., Skaletsky H., Hu Y.C., van Wolfswinkel J.C., Igarashi K.J., Bellott D.W., Nefedov M., Reddien P.W., Enders G.C., Uversky V.N., Mello C.C., Page D.C. (2016) A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes. eLife 5, e19993, 1-25


van Wolfswinkel, J.C. (2014) Piwi and potency: PIWI proteins in animal stem cells and regeneration. Integrative and Comparative Biology 54, 700-713

van Wolfswinkel, J.C.*, Wagner, D.E.*, Reddien, P.W. (2014) Single cell analysis reveals functionally distinct classes within the planarian stem cell compartment. Cell Stem Cell 15, 326-339

Srivastava, M., Mazza, K., van Wolfswinkel, J.C., Reddien, P.W. (2014) Whole-body acoel regeneration is controlled by Wnt and Bmp-Admp signaling. Current Biology 24, 1107-1113

Phillips C.M., Montgomery B.E., Breen P.C., Roovers E.F., Rim Y.S., Ohsumi T.K., Newman M.A., van Wolfswinkel J.C., Ketting R.F., Ruvkun G., Montgomery T.A. (2014) MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Current Biology 24, 839-844


Kamminga L.M.*, van Wolfswinkel J.C.*, Luteijn M.J.*, Kaaij L.J.T., Bagijn M.P., Sapetschnig A., Miska E.A., Berezikov E., Ketting R.F. (2012) Differential impact of the Hen1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans. PLoS Genetics 8


van Wolfswinkel, J.C., Ketting, R.F. (2010) The role of small non-coding RNAs in genome stability and chromatin organization. Journal of Cell Science 123, 1825-1839


van Wolfswinkel, J.C., Claycomb, J.M., Batista, P.J., Mello, C.C., Berezikov, E., and Ketting, R.F. (2009). CDE‑1 affects chromosome segregation through uridylation of CSR‑1-bound siRNAs. Cell 139, 135-148.

Claycomb, J.M., Batista, P.J., Pang, K.M., Gu, W., Vasale, J.J., van Wolfswinkel, J.C., Chaves, D.A., Shirayama, M., Mitani, S., Ketting, R.F., Conte, D Jr, Mello, C.C. (2009). The Argonaute CSR‑1 and its 22G-RNA cofactors are required for holocentric chromosome segregation. Cell 139, 123-134.


Robert, V.J., Sijen, T., van Wolfswinkel, J., and Plasterk, R.H. (2005). Chromatin and RNAi factors protect the C. elegans germline against repetitive sequences. Genes and Development 19, 782-787.