Publications
2023
Allikka Parambil, S., Li, D., Zelko, M., Poulet, A., van Wolfswinkel, J.C. (2023) piRNA generation is associated with the pioneer round of translation in stem cells. Nucleic Acids Research, gkad1212, 1-17
van Wolfswinkel, J.C. (2023) Insights in piRNA targeting rules. WIREs RNA, e1811, 1-21
Poulet, A. *, Kratkiewicz, A.J. *, Li, D., van Wolfswinkel, J.C. (2023) Chromatin analysis of adult pluripotent stem cells reveals a unique stemness maintenance strategy. Science Advances 9, eadh4887, 1-17
2022
Dubos, T.*, Poulet, A.*, Thomson, G., Péry, E., Chausse F., Tatout C., Desset S.*, van Wolfswinkel, J.C.*, Jacob Y.* (2022) NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects. BMC Bioinformatics 23, 216, 1-11
2021
Li D., Taylor D.H, van Wolfswinkel J.C. (2021) PIWI-mediated control of tissue-specific transposons is essential for somatic cell differentiation. Cell Reports 37, 109776, 1-18
2016
Carmell M.A., Dokshin G.A., Skaletsky H., Hu Y.C., van Wolfswinkel J.C., Igarashi K.J., Bellott D.W., Nefedov M., Reddien P.W., Enders G.C., Uversky V.N., Mello C.C., Page D.C. (2016) A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes. eLife 5, e19993, 1-25
2014
van Wolfswinkel, J.C. (2014) Piwi and potency: PIWI proteins in animal stem cells and regeneration. Integrative and Comparative Biology 54, 700-713
van Wolfswinkel, J.C.*, Wagner, D.E.*, Reddien, P.W. (2014) Single cell analysis reveals functionally distinct classes within the planarian stem cell compartment. Cell Stem Cell 15, 326-339
Srivastava, M., Mazza, K., van Wolfswinkel, J.C., Reddien, P.W. (2014) Whole-body acoel regeneration is controlled by Wnt and Bmp-Admp signaling. Current Biology 24, 1107-1113
Phillips C.M., Montgomery B.E., Breen P.C., Roovers E.F., Rim Y.S., Ohsumi T.K., Newman M.A., van Wolfswinkel J.C., Ketting R.F., Ruvkun G., Montgomery T.A. (2014) MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation. Current Biology 24, 839-844
2012
Kamminga L.M.*, van Wolfswinkel J.C.*, Luteijn M.J.*, Kaaij L.J.T., Bagijn M.P., Sapetschnig A., Miska E.A., Berezikov E., Ketting R.F. (2012) Differential impact of the Hen1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans. PLoS Genetics 8
2010
van Wolfswinkel, J.C., Ketting, R.F. (2010) The role of small non-coding RNAs in genome stability and chromatin organization. Journal of Cell Science 123, 1825-1839
2009
van Wolfswinkel, J.C., Claycomb, J.M., Batista, P.J., Mello, C.C., Berezikov, E., and Ketting, R.F. (2009). CDE‑1 affects chromosome segregation through uridylation of CSR‑1-bound siRNAs. Cell 139, 135-148.
Claycomb, J.M., Batista, P.J., Pang, K.M., Gu, W., Vasale, J.J., van Wolfswinkel, J.C., Chaves, D.A., Shirayama, M., Mitani, S., Ketting, R.F., Conte, D Jr, Mello, C.C. (2009). The Argonaute CSR‑1 and its 22G-RNA cofactors are required for holocentric chromosome segregation. Cell 139, 123-134.
2005
Robert, V.J., Sijen, T., van Wolfswinkel, J., and Plasterk, R.H. (2005). Chromatin and RNAi factors protect the C. elegans germline against repetitive sequences. Genes and Development 19, 782-787.